PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G36990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 164aa    MW: 17848.6 Da    PI: 10.862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G36990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.4e-1073114955
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  OB02G36990.1  73 AKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 114
                   69******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.09164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1265122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-1466124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-1066118No hitNo description
SMARTSM003532.0E-1170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-773114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTGYADMLLI TFPGRSVHGA RTSLDVRVEK RAQNAAESQA VSPSKKQCGA SRKTSKAKSA  60
PTTPTKDPQS LAAKNRRERI SERLRILQEL VPNGTKVDLV TMLEKAISYV KFLQLQVKVL  120
AKDEFWPAQG GKAPEISQVK EALDAILSSS SSPPPPLAGR QPRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-164AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648975.13e-92PREDICTED: transcription factor bHLH83-like, partial
SwissprotQ9C7072e-55BH083_ARATH; Transcription factor bHLH83
TrEMBLJ3LGD21e-117J3LGD2_ORYBR; Uncharacterized protein
STRINGOB02G36990.11e-116(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-41ROOT HAIR DEFECTIVE6